With XenApp 6, Citrix removed the need for XenAppPrep when you want to prepare your image for cloning or provisioning.
Citrix published the following documentation in which 3 approaches to preparing for XenApp 6 imaging and provisioning are described: http://support.citrix.com/proddocs/topic/xenapp6-w2k8-install/ps-image-prep.html.
Although the Citrix documentation says otherwise, you may have the same STA ID on all provisioned XenApp servers to which you assigned your vDisk. Even after sealing the image with the XenApp server configuration tool 1.1 and choosing “Prepare this server for imaging and provisioning”.
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